Visualizer

Visualizer(*, structure: AnnotatedStructure, name: str | None = 'structure', cartoon_color: str | None = 'residueindex') → None

Interactive 3D visualization wrapper for biomolecular structures.

This class provides a lightweight interface to render an AnnotatedStructure using nglview. Structures are serialized to a temporary PDB file and displayed in a Jupyter-compatible interactive viewer.

Parameters:

• structure (AnnotatedStructure) – Annotated structure to visualize.

• name (str, optional) – Base name used for temporary files and viewer identification.

• cartoon_color (str, optional) – Coloring scheme applied to the cartoon representation. This may be any valid NGL color scheme (e.g. "residueindex", "chainid", "element").